PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01523.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 198aa    MW: 21990.6 Da    PI: 7.2737
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01523.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1751100255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Rsa1.0_01523.1_g00009.1  51 SFRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFSTAEKAARAHDVAALAIKG 100
                              69****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.68E-3450110No hitNo description
PfamPF008471.2E-1150100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-3251109IPR001471AP2/ERF domain
PROSITE profilePS5103222.98551108IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2151109IPR016177DNA-binding domain
SMARTSM003801.8E-3951114IPR001471AP2/ERF domain
PRINTSPR003671.5E-105263IPR001471AP2/ERF domain
PRINTSPR003671.5E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDHSSSSESH LDYCRSFQDL PAPERTVNSN NPKKKRVKKD NDEKAVSKHP SFRGVRMRQW  60
GKWVSEIREP RKKSRIWLGT FSTAEKAARA HDVAALAIKG RSAHLNFPEL AYHFPRPASV  120
NPKDIQAAAA AAAAVAIDLE VDTSLPSPAS TEHSYPAMTA TADDAFTDLP DLLLDVNHKL  180
DGFWDCLPSE EPFFTGSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1547108163ATERF1
3gcc_A2e-1547108163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13138PKKKRVKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013659032.11e-113PREDICTED: ethylene-responsive transcription factor ERF038-like
SwissprotQ9ZQP31e-81ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A078JY001e-112A0A078JY00_BRANA; BnaAnng41450D protein
TrEMBLA0A0D3C4D71e-112A0A0D3C4D7_BRAOL; Uncharacterized protein
STRINGBra017302.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24922374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.15e-67ERF family protein